skill detail

Bio Alignment Amplicon Clipping

GPTomics/bio-alignment-amplicon-clipping

Trim PCR primers from aligned reads in amplicon-panel BAMs using samtools ampliconclip. Use when processing SARS-CoV-2 ARTIC, hereditary cancer panels, ctDNA hot-spot panels, or any amplicon assay where primer-derived bases would falsely confirm reference at primer footprints.

communityprovisionalothertrimpcrprimers

skillrank score

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SkillRank score blends community stars, real usage, and our eval lift; provisional until a skill is evaluated -- so popularity alone can't reach the top tier.

source

★ 1.2k

GPTomics/bioSkills

alignment-files/alignment-amplicon-clipping

open on GitHub ▸

eval status

eval pending

Success delta, token delta, and trial count are not available yet. No eval number is shown until this skill has measured results.

install

$ skillrank install GPTomics/bio-alignment-amplicon-clipping

$ curl -fsSL skillrank.dev | sh